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商连光

  商连光 研究员

  中国农业科学院(深圳)农业基因组研究所

  地址:深圳市大鹏新区布新路97号,邮编:518124

  Email: shanglianguang@caas.cn

  

  学习经历

  2016.7-2019.7    中国农业科学院(深圳)农业基因组研究所 博士后

  2010.9-2016.6     中国农业大学 获博士学位


  工作经历

  2021.12-至今 中国农业科学院(深圳)农业基因组研究所 研究员

  2019.6-2021.11      中国农业科学院(深圳)农业基因组研究所 副研究员

  2016.7-2019.5      中国农业科学院(深圳)农业基因组研究所 助理研究员


  所获荣誉

  2019年10月,深圳市高层次人才

  2016年8月,入选人社部首批“博士后创新人才支持计划”

  2016年6月,北京市优秀毕业生


从事水稻群体基因组演化、群体多组学大数据挖掘、复杂农艺性状的遗传解析,以及高产优质水稻的分子设计育种。他以第一或通讯作者(含并列)在Trends in Plant Science、Molecular Plant、New Phytologist、Plant Biotechnology Journal等高水平杂志上共发表25篇SCI论文。获软件著作权2项,审定新品种1个。人社部首批“博士后创新人才支持计划”入选者,获得国家自然科学基金、广东省自然科学基金、中国博士后科学基金一等资助、深圳市科技计划等项目资助。担任多个SCI期刊审稿人。

主要研究方向:收集全球野生水稻和栽培水稻种质资源进行群体多组学大数据挖掘以及复杂农艺性状的有利等位基因克隆及功能研究。


  招聘信息

常年招访问学者、博士后和客座研究生,欢迎对水稻群体多组学和功能组学研究方向感兴趣的优秀科研人员和同学申请。

欢迎各高校和研究单位同学来本课题组实习,欢迎报考本实验室博士和硕士研究生。


部分论文:#共同第一作者,*通讯作者


2022

1.  Ning Yan#*, Ting Yang#, Xiu-Ting Yu#, Lianguang Shang#, Deping Guo, Yu Zhang, Lin Meng, Qianqian Qi, Yali Li, Yongmei Du, Xinmin Liu, Xiaolong Yuan, Peng Qin, Jie Qiu, Qian Qian*, Zhongfeng Zhang*. Chromosome-level genome assembly of Zizania latifolia provides insights into its seed shattering and phytocassane biosynthesis. Communications Biology, 2022.


2021

1.  Yanqing Sun#, Lianguang Shang#, Qian-Hao Zhu, Longjiang Fan*, Longbiao Guo* Twenty years of plant genome sequencing: achievements and challenges. Trends in Plant Science, 2021. doi.org/10.1016/j.tplants.2021.10.006

2.  Jing Xu#, Lianguang Shang#, Jiajia Wang#, Minmin Chen, Xue Fu, Huiying He, Zian Wang, Dali Zeng, Li Zhu, Jiang Hu, Chao Zhang, Guang Chen, Zhenyu Gao, Weiwei Zou, Deyong Ren, Guojun Dong, Lan Shen, Qiang Zhang, Longbiao Guo, Qian Qian*, and Guangheng Zhang*, The SEEDLING BIOMASS 1 allele from indica rice enhances yield performance under low-nitrogen environments. Plant Biotechnology Journal, 2021.doi.org/10.1111/pbi.13642

3.  Jiyue Qiao#, Hongzhen Jiang#, Yuqing Lin#, Lianguang Shang#, Mei Wang, Dongming Li, Xiangdong Fu, Markus Geisler, Yanhua Qi*, Zhenyu Gao*, Qian Qian* A Novel miR167a-ARF6-AUX3 Pathway Regulates Grain Length and Weight in Rice. Molecular Plant, 2021. doi: 10.1016/j.molp.2021.06.023

4.  Yang Lv#, Jie Ma#, Yueying Wang#, Quan Wang, Xueli Lu, Haitao Hu, Qian Qian, Longbiao Guo*, and Lianguang Shang*, Loci and natural alleles for low-nitrogen-induced growth response revealed by GWAS analysis in rice (Oryza sativa L.). Frontiers in Plant Science, 2021. doi: 10.3389/fpls.2021.770736

5.  Zhaoran Wei#, Qiaoling Yuan#, Hai Lin#, Xiaoxia Li, Chao Zhang, Hongsheng Gao, Bin Zhang, Huiying He, Tianjiao Liu, Zhang Jie, Xu Gao, Shandang Shi, Bo Wang, Zhenyu Gao, Lingrang Kong, Qian Qian*, Lianguang Shang*. Linkage analysis, GWAS, transcriptome analysis to identify candidate genes for rice seedlings in response to high temperature stress. BMC Plant Biology. 21, 85 (2021). DOI: 10.1186/s12870-021-02857-2

6. Jianping Yu#, Chaolei Liu#, Hai Lin#, Bin Zhang, Xiaoxia Li, Qiaoling Yuan, Tianjiao Liu, Huiying He, Zhaoran Wei, Shilin Ding, Chao Zhang, Hongsheng Gao, Longbiao Guo, Quan Wang, Qian Qian*, Lianguang Shang*. Loci and natural alleles for cadmium-mediated growth responses revealed by a genome wide association study and transcriptome analysis in rice. BMC Plant Biology. 2021. DOI: 10.1186/s12870-021-03145-9

7.  Jiangfan Guo#, Wei Li#, Lianguang Shang, Yuguang Wang, Peng Yan, Youhuang Bai, Xiaowen Da, kai Wang, Qian Qian, Ruirui Jiang, Chuanzao Mao*, Xiaorong Mo*, OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1. New Phytologist, 2021, 230: 1953-1966.


2020

1.  Yuexing Wang#, Lianguang Shang#, Hong Yu#, Longjun Zeng#, Jiang Hu, Shen Ni, Yuchun Rao, Sanfeng Li, Jinfang Chu, Xiangbing Meng, Lei Wang, Ping Hu, Shujing Kang, Minghao Qu, Hai Lin, Xingming Hu, Hongqi Chen, Bing Wang, Zhenyu Gao, Dali Zeng, Xudong Zhu, Guosheng Xiong*, Jiayang Li*, Qian Qian*, A strigolactones biosynthesis gene contributed to the Green Revolution in rice. Molecular Plant, 2020, 13: 923-932.

2.  Banpu Ruan#, Lianguang Shang#, Bin Zhang, Jiang Hu, Yuexing Wang, Anpeng Zhang, Chaolei Liu, Youlin Peng, Li Zhu, Deyong Ren, Guojun Dong, Guangheng Zhang, Dali Zeng, Longbiao Guo, Zhenyu Gao* and Qian Qian*, Natural variation in the promoter of TGW2 determines grain width and weight in rice. New Phytologist, 2020, 227: 629-640.

3.  Sanfeng Li#, Lan Shen#, Ping Hu, Xianmei Wu, Qiaoling Yuan, Yuchun Rao, Qian Qian, Kejian Wang, Xudong Zhu, Lianguang Shang*, Yuexing Wang*, A Method for Effectively Overcoming Tight Functional Linkage Between Genes in Rice by CRISPR/Cas9 System, Rice Science, 2020, 27(3): 180-183.

4.  Jun Lv#, Lianguang Shang#, Yun Chen#, Yao Han, Xiaoyan Yang, Shuzhang Xie, Wenqin Bai, Mingyu Hu, Hong Wu, Kairong Lei, Yanan Yang, Shengzhen Ge, Hai Phuong Trinh 1, Yi Zhang 3, Longbiao Guo*, Zhongwei Wang, OsSLC1 encodes a pentatricopeptide repeat protein essential for early chloroplast development and seedling survival, Rice, 2020 13(1):25

5.  Hongsheng Gao#, Chao Zhang#, Huiying He#, Tianjiao Liu, Bin Zhang, Hai Lin, Xiaoxia Li, Zhaoran Wei, Qiaoling Yuan, Quan Wang, Chunyan Yu*, Lianguang Shang*. Loci and alleles for submergence responses revealed by GWAS and transcriptional analysis in rice, Molecular Breeding, (2020) 40:75


2019

1.  Bin Zhang#, Lianguang Shang#, Banpu Ruan, Anpeng Zhang, Shenglong Yang, Hongzhen Jiang, Chaolei Liu, Kai Hong, Hai Lin, Zhenyu Gao, Jiang Hu, Dali Zeng, Longbiao Guo, Qian Qian*, Development of three sets of high-throughput genotyped rice chromosome segment substitution lines and QTL mapping for eleven traits, Rice, 2019, 12(33):1-15.

2.  Chaolei Liu#, Zhenyu Gao#, Lianguang Shang#, Changhong Yang, Banpu Ruan, Dali Zeng, Longbiao Guo, Fangjie Zhao, Chaofeng Huang*, Qian Qian*, Natural variation in the promoter of OsHMA3 contributes to differential grain cadmium accumulation between Indica and Japonica rice, Journal of Integrative Plant Biology, 2019, DOI: 10.1111/jipb.12794

3.  Yang Lv#, Yueying Wang#, Jahan Noushin, Haitao Hu, Ping Chen, Lianguang Shang, Haiyan Lin, Guojun Dong, Jiang Hu, Li Zhu, Qian Qian, Yu Zhang, Longbiao Guo, Genome-wide association analysis and allelic mining of grain.shape related traits in rice. Rice Science, 2019, 26(5): 2.

4.  Zhenyu Gao#, Yufeng Wang#, Guang Chen#, Anpeng Zhang, Shenglong Yang, Lianguang Shang, Danying Wang, Banpu Ruan, Chaolei Liu, Hongzhen Jiang, Guojun Dong, Li Zhu, Jiang Hu, Guangheng Zhang, Dali Zeng, Longbiao Guo, Guohua Xu, Sheng Teng, Nicholas P Harberd*, Qian Qian*, The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency, Nature Communications, 2019, 10(1): 5207


2018

Shikai Hu, Xingming Hu, Jiang Hu, Lianguang Shang, Guojun Dong, Dali Zeng, Longbiao Guo, Qian Qian*, Xiaowei, a new rice germplasm for large-scale indoor research. Molecular Plant, 2018, 11(11): 1418.


2017

商连光, 高振宇, 钱前*, 作物杂种优势遗传基础的研究进展,植物学报,2017,52 (1) :10-18.


2016

1.  Lianguang Shang, Yumei Wang, ShihuCai, Lingling Ma, Fang Liu, Zhiwen Chen, Ying Su, Kunbo Wang, Jinping Hua*, Genetic analysis of Upland cotton dynamic heterosis for boll number per plant at multiple developmental stages, Scientific Reports, 2016, 6: 35515.

2.  Lianguang Shang, Qingzhi Liang, Yumei Wang, Yanpeng Zhao, Kunbo Wang, Jinping Hua*, Epistasis together with partial dominance, over-dominance and QTL by environment interactions contribute to yield heterosis in Upland cotton, Theoretical and Applied Genetics, 2016, 129: 1429-1446.

3.  Lianguang Shang, Yumei Wang, Xiaocui Wang, Fang Liu, Abdugheni Abduweli, Shihu Cai, Yuhua Li, Lingling Ma, Kunbo Wang, Jinping Hua*, Genetic analysis and QTL detection on fiber traits using two recombinant inbred lines and their backcross populations in Upland cotton, G3: Genes, Genomes, Genetics, 2016, 6: 2717-2724.

4.  Lianguang Shang, Lingling Ma, Yumei Wang, Ying Su, Xiaocui Wang, Yuhua Li, Abdugheni Abduweli, Shihu Cai, Fang Liu Kunbo Wang, Jinping Hua*, Main effect QTL with dominance determines heterosis for dynamic plant height in upland cotton, G3: Genes, Genomes, Genetics, 2016, 6(10): 3373-3379.

5.  Lianguang Shang, Yumei Wang, Shihu Cai, Xiaocui Wang, Yuhua Li, Abdugheni Abduweli, and Jinping Hua*, Partial dominance, overdominance, epistasis and QTL by environment interactions contribute to the heterosis in two Upland cotton hybrids, G3: Genes, Genomes, Genetics, 2016, 6: 499-507.

6.  Lianguang Shang, Shihu Cai, Lingling Ma, Yumei Wang, Abdugheni Abduweli, Meiyan Wang, Xiaocui Wang, Qingzhi Liang, Jinping Hua*, Seedling root QTLs analysis on dynamic development and upon nitrogen deficiency stress in Upland cotton, Euphytica, 2016, 207: 645-663.

7.  Lianguang Shang, Abdugheni Abduweli, Yumei Wang, Jinping Hua*, Genetic analysis and QTL mapping of oil content and seed index using two recombinant inbred lines and two backcross populations in Upland cotton, Plant Breeding, 2016, 135: 224-231.


2015

1.  Qingzhi Liang#, Lianguang Shang#, Yumei Wang, and Jinping Hua*, Partial dominance, overdominance and epistasis as the genetic basis of heterosis in Upland cotton (Gossypium hirsutum L.), PLoS ONE, 2015, 10(11): e0143548.

2.  Lianguang Shang, Fang Liu, Yumei Wang, Abdugheni Abduweli, Shihu Cai, Kunbo Wang, Jinping Hua*, Dynamic QTL mapping for plant height in Upland cotton (Gossypium hirsutum), Plant Breeding, 2015, 134(6):703–712.

3.  Lianguang Shang#, Qingzhi Liang#, Yumei Wang, Xiaocui Wang, Kunbo Wang, Abdugheni Abduweli, Lingling Ma, Shihu Cai, Jinping Hua*, Identification of stable QTLs controlling fiber traits properties in multi-environment using recombinant inbred lines in Upland cotton (Gossypium hirsutum L.), Euphytica, 2015, 205(3):877-888.

4.  Lianguang Shang, Junhui Li, Yumei Wang, Yuhua Li, Dan Wang, Min Xiong, Jinping Hua*, Establishment and application of model for determining oil content of cottonseed using near infrared spectroscopy, Spectroscopy and Spectral Analysis, 2015, 35: 609-612.


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